Package | Description |
achilles | An artificial life and evolution simulator |
adun.app | Molecular Simulator for GNUstep |
amap-align | Protein multiple alignment by sequence annealing |
apbs | Adaptive Poisson Boltzmann Solver |
astronomical-almanac | astronomical almanac - calculate planet and star positions |
avce00 | Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format. |
avida-base | Auto-adaptive genetic system for Artificial Life research |
avida-qt-viewer | qt viewer for avida |
avida-viewer | ncurses viewer for avida |
biococoa.app | Sequence file format conversion for GNUstep |
biomode | [Biology] An Emacs mode to edit genetic data |
bioperl | Perl tools for computational molecular biology |
biosquid | utilities for biological sequence analysis |
blast2 | Basic Local Alignment Search Tool |
boinc-app-seti | SETI@home application for the BOINC client |
boxshade | [Biology] Pretty-printing of multiple sequence alignments |
cassbeam | A program for Cassegrain antenna modelling |
cernlib | almost complete set of Debian Cernlib packages |
cernlib-core | Cernlib main libraries and programs |
cernlib-core-dev | Cernlib development headers, tools, and static libraries |
cernlib-extras | miscellaneous Cernlib programs unlikely to be used by many |
cernlib-montecarlo | Cernlib Monte Carlo libraries |
chemtool | Chemical structures drawing program |
ctsim | Computed tomography simulator |
ctsim-help | Online help file for CTSim |
ctsim-pentium4 | Computed tomography simulator (Pentium 4 optimized) |
dcmtk | The OFFIS DICOM toolkit command line utilities |
dialign | Segment-based multiple sequence alignment |
drawmap | draws customized maps, using raw USGS data files |
dx | OpenDX (IBM Visualization Data Explorer) - main package |
dxsamples | Sample programs for the OpenDX Data Explorer |
e00compr | a program to read/write Arc/Info compressed E00 files |
easychem | Draw high-quality molecules and 2D chemical formulas |
engauge-digitizer | interactively extracts numbers from bitmap graphs or maps |
ent | pseudorandom number sequence test program |
fastdnaml | [Biology] Tool for construction of phylogenetic trees of DNA sequences |
fastlink | [Biology] A faster version of pedigree programs of Linkage |
fastlink-doc | [Biology] Some papers about fastlink |
fityk | general-purpose nonlinear curve fitting and data analysis |
fv | a tool for viewing and editing FITS format files |
g3data | extract data from scanned graphs |
garlic | A visualization program for biomolecules |
gausssum | Parses and displays Gaussian, GAMESS, and HyperChem output |
gchempaint | 2D chemical structures editor for the GNOME2 desktop |
gcu-bin | GNOME chemistry utils (applications) |
gcx | astronomical image processing and photometry gtk+ application |
gdal-bin | Geospatial Data Abstraction Library - Utility programs |
gdis | molecular display |
gdpc | visualiser of molecular dynamic simulations |
gdpc-examples | example files for the gdpc program |
geant321 | [Physics] Particle detector description and simulation tool |
geant321-data | [Physics] Data for Geant 3.21 detector simulator |
genesis | general-purpose neural simulator |
gff2aplot | pair-wise alignment-plots for genomic sequences in PostScript |
gff2ps | produces PostScript graphical output from GFF-files |
gmt | Generic Mapping Tools |
gmt-tutorial-pdf | Tutorial for GMT, the Generic Mapping Tools (PDF) |
gperiodic | periodic table application |
gpiv | Graphic User Interface program for Particle Image Velocimetry |
gpivtools | Command line programs for Particle Image Velocimetry |
gpx2shp | convert GPS or GPX file to ESRI Shape file |
grass | Geographic Resources Analysis Support System |
grass-doc | Geographic Resources Analysis Support System documentation |
gri | a language for scientific illustration |
gri-el | Emacs major-mode for gri, a language for scientific graphics |
gromacs | Molecular dynamics simulator, with building and analysis tools |
gromacs-lam | Molecular dynamics sim, binaries for LAM-MPI parallelization |
gromacs-mpich | Molecular dynamics sim, binaries for MPICH parallelization |
h5utils | HDF5 files visualization tools |
harminv | extraction of complex frequencies and amplitudes from time series |
hdf5-tools | Hierarchical Data Format 5 (HDF5) - Runtime tools |
hmmer | profile hidden Markov models for protein sequence analysis |
hmmer-pvm | HMMER programs with PVM (Parallel Virtual Machine) support |
hodie | prints the date in latin |
ifrit | a powerful tool for visualizing 3-dimensional data sets |
imview | Image viewing and analysis application |
indi | Instrument Neutral Distributed Interface for astronomical devices |
kalign | Global and progressive multiple sequence alignment |
kalzium | chemistry teaching tool for KDE |
kalzium-data | data files for Kalzium |
kstars | desktop planetarium for KDE |
kstars-data | data files for KStars desktop planetarium |
kxterm | Cernlib's KUIP terminal emulator |
leksbot | An explanatory dictionary of botanic and biological terms |
libbio-ruby | bioruby tools for computational molecular biology |
libbio-ruby1.8 | bioruby tools for computational molecular biology |
libghemical-data | Molecular Modelling Library (Data Files) |
libpostgis-java | geographic objects support for PostgreSQL -- JDBC support |
libqgis0 | QGIS Geographic Information System - shared library |
libqgis0-dev | QGIS Geographic Information System - development files |
loki | [Biology] MCMC linkage analysis on general pedigrees |
loki-doc | [Biology] Postscript manual for loki |
mayavi | A scientific data visualization system |
minc-tools | MNI medical image format tools |
mipe | [Biology] Tools to store PCR-derived data |
mn-fit | interactive analysis package for fitting data and histograms |
mn-fit-common | common files for Mn_Fit |
montecarlo-base | [Physics] Common files for Cernlib Monte Carlo libraries |
mozilla-biofox | extension of bioinformatics tools to Mozilla and Iceweasel browsers |
mpb | MIT Photonic-Bands |
mpb-mpi | MIT Photonic-Bands, parallel (mpich) version |
mpqc | The Massively Parallel Quantum Chemistry Program |
mpqc-support | Support programs and tools for MPQC |
muscle | [Biology] multiple alignment program of protein sequences |
muscle-doc | [Biology] documentation to sequence alignment program |
ncbi-epcr | [Biology] Tool to test a DNA sequence for the presence of sequence tagged sites |
ncbi-epcr-data | [Biology] NCBI public STS data |
ncbi-tools-bin | NCBI libraries for biology applications (text-based utilities) |
ncbi-tools-x11 | NCBI libraries for biology applications (X-based utilities) |
necpp | NEC2 Evolution Antenna Modelling System |
netcdf-bin | Programs for reading and writing NetCDF files |
njplot | [Biology] A tree drawing program |
openbabel | Convert and manipulate chemical data files |
openuniverse | 3D Universe Simulator |
openuniverse-common | 3D Universe Simulator data files |
paje.app | generic visualization tool (Gantt chart and more) |
paw | Physics Analysis Workstation - a graphical analysis program |
paw++ | Physics Analysis Workstation (Lesstif-enhanced version) |
paw++-static | Dummy package for smooth upgrades of Paw++ |
paw-common | Physics Analysis Workstation (common files) |
paw-demos | Physics Analysis Workstation examples and tests |
paw-static | Dummy package for smooth upgrades of PAW |
perlprimer | [Biology] graphical design of primers for PCR |
planets | Gravitation simulation of planetary bodies |
poa | Partial Order Alignment for multiple sequence alignment |
polyxmass | Mass spectrometry software framework |
polyxmass-bin | Mass spectrometry framework - GUI program |
polyxmass-bin-common | Mass spectrometry framework - GUI program arch-indep data |
polyxmass-common | Mass spectrometry framework - essential polymer chemistry data |
polyxmass-data | Mass spectrometry framework - supplementary chemical data |
praat | program for speech analysis and synthesis |
primer3 | [Biology] Tool to design flanking oligo nucleotides for DNA amplification |
probcons | PROBabilistic CONSistency-based multiple sequence alignment |
probcons-extra | Extra programs from the probcons package |
proj | Cartographic projection filter and library |
psi3 | Quantum Chemical Program Suite |
pymol | An OpenGL Molecular Graphics System written in Python |
python-pyepl | library for coding psychology experiments in Python |
python-pyepl-common | library for coding psychology experiments in Python |
python-pyode | open-source Python bindings for The Open Dynamics Engine |
qgis | Geographic Information System (GIS) |
qgis-plugin-grass | Plugin for accessing GRASS data from QGIS |
qmc | Quine McClusky Simplification Tool |
qtdmm | GUI for digital multimeter |
rasmol | Visualize biological macromolecules |
rasmol-doc | Documentation for rasmol |
readseq | [Biology] Conversion between sequence formats |
saods9 | image display tool for astronomy |
seaview | [Biology] Multiple sequence alignment editor |
seesat5 | a satellite location program |
sextractor | source extractor for astronomical images |
sigma-align | Simple greedy multiple alignment of non-coding DNA sequences |
sim4 | tool for aligning cDNA and genomic DNA |
spass | An automated theorem prover for first-order logic with equality |
ssystem | 3D solar system simulator |
stardata-common | Common framework to manage astronomy packages |
starplot | 3-dimensional perspective star map viewer |
stellarium | real-time photo-realistic sky generator |
stellarium-data | datafiles for Stellarium, a real-time photo-realistic sky generator |
survex | cave surveying and mapping software |
survex-aven | sophisticated cave survey viewer for Survex |
survex-svxedit | survey data editor for Survex |
t-coffee | [Biology] Multiple Sequence Alignment |
tessa | simulation of 3D optical systems with the FDTD method |
tessa-mpi | simulation of 3D optical systems using FDTD on LAM-MPI clusters |
textopo | [Biology] LaTeX presentation of topology of transmembrane proteins |
therion | Cave surveying - 2D and 3D drawing software |
tigr-glimmer | [Biology] Gene detection in archea and bacteria |
tochnog | A free implicit/explicit finite element analysis program |
transcalc | microwave and RF transmission line calculator |
tree-ppuzzle | [Biology] Reconstruction of phylogenetic trees by maximum likelihood |
tree-puzzle | [Biology] Reconstruction of phylogenetic trees by maximum likelihood |
tree-puzzle-doc | [Biology] Reconstruction of phylogenetic trees by maximum likelihood |
treeviewx | Displays and prints phylogenetic trees |
units-filter | Parser for expressions concerning physical values |
viewmol | A graphical front end for computational chemistry programs. |
wise | comparison of biopolymers, commonly DNA and protein sequences |
wise-doc | documentation for the wise package |
xbs | 3-d models and movies of molecules |