| Package | Description |
| achilles | An artificial life and evolution simulator |
| adun.app | Molecular Simulator for GNUstep |
| amap-align | Protein multiple alignment by sequence annealing |
| apbs | Adaptive Poisson Boltzmann Solver |
| astronomical-almanac | astronomical almanac - calculate planet and star positions |
| avce00 | Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format. |
| avida-base | Auto-adaptive genetic system for Artificial Life research |
| avida-qt-viewer | qt viewer for avida |
| avida-viewer | ncurses viewer for avida |
| biococoa.app | Sequence file format conversion for GNUstep |
| biomode | [Biology] An Emacs mode to edit genetic data |
| bioperl | Perl tools for computational molecular biology |
| biosquid | utilities for biological sequence analysis |
| blast2 | Basic Local Alignment Search Tool |
| boinc-app-seti | SETI@home application for the BOINC client |
| boxshade | [Biology] Pretty-printing of multiple sequence alignments |
| cassbeam | A program for Cassegrain antenna modelling |
| cernlib | almost complete set of Debian Cernlib packages |
| cernlib-core | Cernlib main libraries and programs |
| cernlib-core-dev | Cernlib development headers, tools, and static libraries |
| cernlib-extras | miscellaneous Cernlib programs unlikely to be used by many |
| cernlib-montecarlo | Cernlib Monte Carlo libraries |
| chemtool | Chemical structures drawing program |
| ctsim | Computed tomography simulator |
| ctsim-help | Online help file for CTSim |
| ctsim-pentium4 | Computed tomography simulator (Pentium 4 optimized) |
| dcmtk | The OFFIS DICOM toolkit command line utilities |
| dialign | Segment-based multiple sequence alignment |
| drawmap | draws customized maps, using raw USGS data files |
| dx | OpenDX (IBM Visualization Data Explorer) - main package |
| dxsamples | Sample programs for the OpenDX Data Explorer |
| e00compr | a program to read/write Arc/Info compressed E00 files |
| easychem | Draw high-quality molecules and 2D chemical formulas |
| engauge-digitizer | interactively extracts numbers from bitmap graphs or maps |
| ent | pseudorandom number sequence test program |
| fastdnaml | [Biology] Tool for construction of phylogenetic trees of DNA sequences |
| fastlink | [Biology] A faster version of pedigree programs of Linkage |
| fastlink-doc | [Biology] Some papers about fastlink |
| fityk | general-purpose nonlinear curve fitting and data analysis |
| fv | a tool for viewing and editing FITS format files |
| g3data | extract data from scanned graphs |
| garlic | A visualization program for biomolecules |
| gausssum | Parses and displays Gaussian, GAMESS, and HyperChem output |
| gchempaint | 2D chemical structures editor for the GNOME2 desktop |
| gcu-bin | GNOME chemistry utils (applications) |
| gcx | astronomical image processing and photometry gtk+ application |
| gdal-bin | Geospatial Data Abstraction Library - Utility programs |
| gdis | molecular display |
| gdpc | visualiser of molecular dynamic simulations |
| gdpc-examples | example files for the gdpc program |
| geant321 | [Physics] Particle detector description and simulation tool |
| geant321-data | [Physics] Data for Geant 3.21 detector simulator |
| genesis | general-purpose neural simulator |
| gff2aplot | pair-wise alignment-plots for genomic sequences in PostScript |
| gff2ps | produces PostScript graphical output from GFF-files |
| gmt | Generic Mapping Tools |
| gmt-tutorial-pdf | Tutorial for GMT, the Generic Mapping Tools (PDF) |
| gperiodic | periodic table application |
| gpiv | Graphic User Interface program for Particle Image Velocimetry |
| gpivtools | Command line programs for Particle Image Velocimetry |
| gpx2shp | convert GPS or GPX file to ESRI Shape file |
| grass | Geographic Resources Analysis Support System |
| grass-doc | Geographic Resources Analysis Support System documentation |
| gri | a language for scientific illustration |
| gri-el | Emacs major-mode for gri, a language for scientific graphics |
| gromacs | Molecular dynamics simulator, with building and analysis tools |
| gromacs-lam | Molecular dynamics sim, binaries for LAM-MPI parallelization |
| gromacs-mpich | Molecular dynamics sim, binaries for MPICH parallelization |
| h5utils | HDF5 files visualization tools |
| harminv | extraction of complex frequencies and amplitudes from time series |
| hdf5-tools | Hierarchical Data Format 5 (HDF5) - Runtime tools |
| hmmer | profile hidden Markov models for protein sequence analysis |
| hmmer-pvm | HMMER programs with PVM (Parallel Virtual Machine) support |
| hodie | prints the date in latin |
| ifrit | a powerful tool for visualizing 3-dimensional data sets |
| imview | Image viewing and analysis application |
| indi | Instrument Neutral Distributed Interface for astronomical devices |
| kalign | Global and progressive multiple sequence alignment |
| kalzium | chemistry teaching tool for KDE |
| kalzium-data | data files for Kalzium |
| kstars | desktop planetarium for KDE |
| kstars-data | data files for KStars desktop planetarium |
| kxterm | Cernlib's KUIP terminal emulator |
| leksbot | An explanatory dictionary of botanic and biological terms |
| libbio-ruby | bioruby tools for computational molecular biology |
| libbio-ruby1.8 | bioruby tools for computational molecular biology |
| libghemical-data | Molecular Modelling Library (Data Files) |
| libpostgis-java | geographic objects support for PostgreSQL -- JDBC support |
| libqgis0 | QGIS Geographic Information System - shared library |
| libqgis0-dev | QGIS Geographic Information System - development files |
| loki | [Biology] MCMC linkage analysis on general pedigrees |
| loki-doc | [Biology] Postscript manual for loki |
| mayavi | A scientific data visualization system |
| minc-tools | MNI medical image format tools |
| mipe | [Biology] Tools to store PCR-derived data |
| mn-fit | interactive analysis package for fitting data and histograms |
| mn-fit-common | common files for Mn_Fit |
| montecarlo-base | [Physics] Common files for Cernlib Monte Carlo libraries |
| mozilla-biofox | extension of bioinformatics tools to Mozilla and Iceweasel browsers |
| mpb | MIT Photonic-Bands |
| mpb-mpi | MIT Photonic-Bands, parallel (mpich) version |
| mpqc | The Massively Parallel Quantum Chemistry Program |
| mpqc-support | Support programs and tools for MPQC |
| muscle | [Biology] multiple alignment program of protein sequences |
| muscle-doc | [Biology] documentation to sequence alignment program |
| ncbi-epcr | [Biology] Tool to test a DNA sequence for the presence of sequence tagged sites |
| ncbi-epcr-data | [Biology] NCBI public STS data |
| ncbi-tools-bin | NCBI libraries for biology applications (text-based utilities) |
| ncbi-tools-x11 | NCBI libraries for biology applications (X-based utilities) |
| necpp | NEC2 Evolution Antenna Modelling System |
| netcdf-bin | Programs for reading and writing NetCDF files |
| njplot | [Biology] A tree drawing program |
| openbabel | Convert and manipulate chemical data files |
| openuniverse | 3D Universe Simulator |
| openuniverse-common | 3D Universe Simulator data files |
| paje.app | generic visualization tool (Gantt chart and more) |
| paw | Physics Analysis Workstation - a graphical analysis program |
| paw++ | Physics Analysis Workstation (Lesstif-enhanced version) |
| paw++-static | Dummy package for smooth upgrades of Paw++ |
| paw-common | Physics Analysis Workstation (common files) |
| paw-demos | Physics Analysis Workstation examples and tests |
| paw-static | Dummy package for smooth upgrades of PAW |
| perlprimer | [Biology] graphical design of primers for PCR |
| planets | Gravitation simulation of planetary bodies |
| poa | Partial Order Alignment for multiple sequence alignment |
| polyxmass | Mass spectrometry software framework |
| polyxmass-bin | Mass spectrometry framework - GUI program |
| polyxmass-bin-common | Mass spectrometry framework - GUI program arch-indep data |
| polyxmass-common | Mass spectrometry framework - essential polymer chemistry data |
| polyxmass-data | Mass spectrometry framework - supplementary chemical data |
| praat | program for speech analysis and synthesis |
| primer3 | [Biology] Tool to design flanking oligo nucleotides for DNA amplification |
| probcons | PROBabilistic CONSistency-based multiple sequence alignment |
| probcons-extra | Extra programs from the probcons package |
| proj | Cartographic projection filter and library |
| psi3 | Quantum Chemical Program Suite |
| pymol | An OpenGL Molecular Graphics System written in Python |
| python-pyepl | library for coding psychology experiments in Python |
| python-pyepl-common | library for coding psychology experiments in Python |
| python-pyode | open-source Python bindings for The Open Dynamics Engine |
| qgis | Geographic Information System (GIS) |
| qgis-plugin-grass | Plugin for accessing GRASS data from QGIS |
| qmc | Quine McClusky Simplification Tool |
| qtdmm | GUI for digital multimeter |
| rasmol | Visualize biological macromolecules |
| rasmol-doc | Documentation for rasmol |
| readseq | [Biology] Conversion between sequence formats |
| saods9 | image display tool for astronomy |
| seaview | [Biology] Multiple sequence alignment editor |
| seesat5 | a satellite location program |
| sextractor | source extractor for astronomical images |
| sigma-align | Simple greedy multiple alignment of non-coding DNA sequences |
| sim4 | tool for aligning cDNA and genomic DNA |
| spass | An automated theorem prover for first-order logic with equality |
| ssystem | 3D solar system simulator |
| stardata-common | Common framework to manage astronomy packages |
| starplot | 3-dimensional perspective star map viewer |
| stellarium | real-time photo-realistic sky generator |
| stellarium-data | datafiles for Stellarium, a real-time photo-realistic sky generator |
| survex | cave surveying and mapping software |
| survex-aven | sophisticated cave survey viewer for Survex |
| survex-svxedit | survey data editor for Survex |
| t-coffee | [Biology] Multiple Sequence Alignment |
| tessa | simulation of 3D optical systems with the FDTD method |
| tessa-mpi | simulation of 3D optical systems using FDTD on LAM-MPI clusters |
| textopo | [Biology] LaTeX presentation of topology of transmembrane proteins |
| therion | Cave surveying - 2D and 3D drawing software |
| tigr-glimmer | [Biology] Gene detection in archea and bacteria |
| tochnog | A free implicit/explicit finite element analysis program |
| transcalc | microwave and RF transmission line calculator |
| tree-ppuzzle | [Biology] Reconstruction of phylogenetic trees by maximum likelihood |
| tree-puzzle | [Biology] Reconstruction of phylogenetic trees by maximum likelihood |
| tree-puzzle-doc | [Biology] Reconstruction of phylogenetic trees by maximum likelihood |
| treeviewx | Displays and prints phylogenetic trees |
| units-filter | Parser for expressions concerning physical values |
| viewmol | A graphical front end for computational chemistry programs. |
| wise | comparison of biopolymers, commonly DNA and protein sequences |
| wise-doc | documentation for the wise package |
| xbs | 3-d models and movies of molecules |
Etude RTOS